Lindgren-group's repositories
fatdistnGWAS
Code and data related to the meta-analysis of fat distribution in UK Biobank and GIANT
obesity_femrepr_MR
Code for analyses in "Obesity and risk of female reproductive disorders: A Mendelian Randomisation Study"
hail-on-dnanexus
An unofficial alternative to DXJupyterlab Spark Cluster App
gwas-scripts
A repository containing various scripts useful for performing quality control on data from genome-wide association studies and visualizing results
longitudinal_primarycare
Scripts for assessing longitudinal quantitative traits in UKBIOBANK-linked primary care data
Afib-Stroke-Overlap
Code and calls to software that accompanies manuscript on the overlap of atrial fibrillation genetics and cardioembolic stroke
CredibleSet
R script for credible sets
hail-minimal
A DNAnexus applet for running hail.is python scripts
NeuralNetwork-Examples
The same small networks implemented in different frameworks
atac_dnase_pipelines
ATAC-seq and DNase-seq processing pipeline
causal.relationships.between.obesity.and.leading.causes.of.death.in.men.and.women
Code and genetic risk scores related to "Causal relationships between obesity and leading causes of death in men and women"
infertility_hormones
Scripts for infertility and hormone GWAS meta-analyses and follow-up
UveitisJIA_MHC-fineMapping
Scripts and data used in analyses for "An amino acid motif in HLA-DRβ1 distinguishes patients with uveitis in juvenile idiopathic arthritis." Preprint: https://www.biorxiv.org/content/early/2017/08/14/140954