Markus Lindberg's repositories
count_kmers
Count number of kmer occursnces from a fasta file
aura
A secure, multilingual package manager for Arch Linux and the AUR - Join us on Freenode in #aurapm, or in our Gitter room at https://gitter.im/aurapm/aura
bgcount
Calculate k-mer frequencies in fasta files
datasharing
The Leek group guide to data sharing
deconstructSigs
deconstructSigs
hemoglobin-lab
A computer-based lab for exploring protein structures
DESeq2
Differential gene expression analysis based on the negative binomial distribution
fasta_grepfilter
Grab entries in fasta-file based on header or sequence
getzlab-SignatureAnalyzer
Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.
gpg_transfer
De- and re-encrypt files
ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
psync
Organize images by timestamps
pymotif
Implementation of Gibbs sampling for local alignments
r-pkgs
Building R packages
RSeQC
fork of RSeQC python RNAseq metrics suit of tools
siglasso
Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood
sliding_read_depth
Produce mean read depth over window size of bam-file
snp_windows
Calculate means over a sliding window of SNP-data
tar_bkp
Backing up with tar and systemd-timers
umiAnalyzer
Tools for analyzing umierrorcorrect output
Varscan2VCF
Convert VarScan output to VCF format
vim-snakemake
Snakemake syntax highlighting copied from the official repository. I didn't write this!