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lilab-bcb

lilab-bcb

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pegasus

A tool for analyzing trascriptomes of millions of single cells.

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cirrocumulus

Bring your single-cell data to life

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cumulus

Cloud-based scalable and efficient single-cell genomics workflows

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harmony-pytorch

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nmf-torch

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altocumulus

Command line tool for submitting WDL jobs to Terra or Cromwell server.

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pegasusio

pegasus io module for reading/writing single-cell genomics data

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backedarray

Sparse csc and csr arrays backed by on-disk storage in Zarr or HDF5

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cumulus_feature_barcoding

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stratocumulus

Backend component of Cumulus for different cloud environments.

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cumulus-experiment

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demuxEM

Demultiplexing cell/nucleus hashing data for single-cell genomics

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aws-genomics-workflows

Genomics Workflows on AWS

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bbknn

Batch balanced KNN

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bcb-dockers

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bioconda-recipes

Conda recipes for the bioconda channel.

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cirrocumulus-app-engine

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harmonypy

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

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hnswlib

Header-only C++/python library for fast approximate nearest neighbors

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lilab-bcb.github.io

Dr. Bo Li's lab website

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louvain-feedstock

A conda-smithy repository for louvain.

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merge-test

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pegasus-test-data

Data used for CI test of pegasus repo

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pegasus-tutorials

Tutorial notebooks of Pegasus

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pegasusio-test-data

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scCODA

A statistical test for compositional changes in scRNA

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skylab

Secondary analysis pipelines

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staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

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terra-docker

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TRUST4

TCR and BCR assembly from RNA-seq data

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