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liketree36's starred repositories

Typoon

A text expander that fully supports Korean letters as well. 한글을 제대로 지원하는 텍스트 확장기.

Language:C++GPL-3.05600

superfile

Pretty fancy and modern terminal file manager

Language:GoMIT577700

Community.PowerToys.Run.Plugins

🗂️🔎 Community PowerToys Run Plugins 🔌

Language:C#MIT1800

biol525D

Course material for UBC Biol525D

Language:CSSNOASSERTION1100

jigv

igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"

Language:NimMIT12200

igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

Language:PythonMIT34800

dodari

AI 영한-한영 번역기, 도다리 en-ko/ ko-en AI translator

Language:PythonApache-2.019400

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

Language:PythonApache-2.094600

monolith

⬛️ CLI tool for saving complete web pages as a single HTML file

Language:RustCC0-1.01106500

obsidian-kanban

Create markdown-backed Kanban boards in Obsidian.

Language:TypeScriptGPL-3.0319000

denovohybrid

UNDER CONSTRUCTION: Hybrid genome assembly pipeline using a combination of long and short sequencing reads

Language:NextflowMIT800

lncpipe

UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

Language:NextflowMIT3300

fastquorum

Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)

Language:NextflowMIT2000

radseq

Variant-calling pipeline for Restriction site-associated DNA sequencing (RADseq).

Language:NextflowMIT600

variantcatalogue

Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.

Language:NextflowMIT800

multiplesequencealign

A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.

Language:NextflowMIT2000

detaxizer

A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.

Language:NextflowMIT1300

circrna

circRNA quantification, differential expression analysis and miRNA target prediction of RNA-Seq data

Language:NextflowMIT4400

spatialvi

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

Language:NextflowMIT5000

phageannotator

Pipeline for identifying, annotation, and quantifying phage sequences in (meta)-genomic sequences.

Language:NextflowMIT1000

cageseq

CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.

Language:NextflowMIT1100

dualrnaseq

Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.

Language:NextflowMIT1800

clipseq

CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

Language:NextflowMIT1900

bactmap

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

Language:NextflowMIT5200

rnavar

gatk4 RNA variant calling pipeline

Language:NextflowMIT3600

chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

Language:NextflowMIT19000

hlatyping

Precision HLA typing from next-generation sequencing data

Language:NextflowMIT6200

phyloplace

nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.

Language:GroovyMIT700

nascent

Nascent Transcription Processing Pipeline

Language:NextflowMIT1800

nanoseq

Nanopore demultiplexing, QC and alignment pipeline

Language:NextflowMIT17800