lijiang825 / nk-bloodcancer

Code for making figures for the omics and pertubation studies of NK cells in blood cancers

nk-bloodcancer

Description

Scripts to reproduce figures and analyses in the manuscript "Single-cell functional genomics of natural killer cell evasion in blood cancers" Dufva, Gandolfi et al. Immunity 2023

Download data to reproduce analyses from:

Synapse (scRNA-seq Seurat objects, CRISPR screen count matrices, other processed data): https://doi.org/10.7303/syn52600685 (publicly available download after login)

ArrayExpress (scRNA-seq Seurat objects, CellRanger outputs): https://www.ebi.ac.uk/biostudies/arrayexpress/studies/E-MTAB-13204

EGA (raw scRNA-seq data): EGAS00001007272

Note:

If you use the data, analysis, or results, please cite:

Dufva, Gandolfi et al. https://doi.org/10.1016/j.immuni.2023.11.008