lijax / bioscript

Some shell, perl, python script for my own bioinformatics tasks.

Bioscript

Some shell, python, perl script for my own bioinformatics tasks.

Script Descriptions

• replace_str.sh for data mapping and replacement
• fasta_gi.sh remove all information in fasta header except needed one define by a given number and save the header information in a table

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• sample.py python script template file, adapt this to a working script
• gb2fasta.py convert genbank file to fasta, faa, fna file and extract CDS information
• gbinfo.py Extract genome information(length, gc, etc.)