Lifebit's repositories
cloudos-cli
Python library and Command Line Interface for interacting with Lifebit Applications
action-cloudos-cli
:octocat: Github action to programmatically interact with the Lifebit CloudOS platform using the official API client cloudos-cli
template-nf
Lifebit curated Nextflow pipeline template repository
template4users
A nextflow pipeline template for Users
mutational-signature-aggregation-nf
Results aggregation from https://github.com/lifebit-ai/mutational-signature-nf
gel-data-queries-resources
Notebooks and scripts for querying programmatically source and OMOP data
spammer-nf
A stampede of processes at your fingertips
cancer_drivers
pull out coding mutations from annotation vcfs
cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
ETL-LambdaBuilder
CDM Builder leveraging AWS Lambda
exomiser-pipeline-nf
Nextflow pipeline for - https://github.com/exomiser/Exomiser
fedai-scGPT-cell-type
Source code for base scGPT cell type training model for federated learning
flatironQA
A nextflow pipeline that orchestrates Flatiron internal data QA
MungeSumstats
Rapid standardisation and quality control of GWAS or QTL summary statistics
terraform-public-modules
Terraform public modules