Ray's repositories
StrainScan
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
AnnoSINE_v2
Accelerating de novo SINE annotation in plant and animal genomes
StrainKmer
StrainKmer- an efficient and user-friendly tool for extracting viral strains' k-mers from raw sequencing data
StrainDetect
StrainDetect is an online viral strain-level analysis tool based on VirStrain.
bioconda-recipes
Conda recipes for the bioconda channel.
flask_microblog
flask_microblog
HOTSPOT
HOTSPOT is a hierarchical host prediction tool for plasmid contigs using Transformer.
IDMIL
IDMIL: An alignment-free interpretable deep multiple instance learning (MIL) for predicting disease from whole-metagenomic data
liaoherui.github.io
My blog - 2020 version
LRTK
A unified and versatile toolkit for analyzing Linked-Read sequencing data
PlantBind
A tool for predicting transcription factor binding sites in plants
README
README文件语法解读,即Github Flavored Markdown语法介绍
RNA_virus_detector
VirBot: a protein-based RNA virus detector for metagenomic data
StrainAnalyze
StrainAnalyze: a user-friendly bioinformatics pipeline used to analyze given identified bacterial strains in short reads.
ToolsCommandLines
All command lines running tools in VirStrain paper.