Chen Liao's repositories
DFdynamics
Computational analysis of SCFA time series data
Fungal-genetics-and-computational-biology
Mathematical models, bioinformatics, machine learning and beyond
MSKCC_Microbiome_SD2021_Scripts
Source codes to reproduce figures in our Data Science paper
Source_code_for_Pseudomonas_Metabolomics_Paper
Source codes for systematic analysis of metabolomics of Pseudomonas aeruginosa
carveme
CarveMe: genome-scale metabolic model reconstruction
Fish_network_inference_BMCEcol20_Scripts
The algorithm improves the commonly used technique for parameterizing generalized Lotka-Volterra equation.
Growth_curve_analysis
Wrapper of python package "croissance" to analyze direct readout of bioreactor
Manuscript_oral_bacteria_in_feces
This repository holds all data and scripts to reproduce figures in the manuscript
Modeling_Ecoli_H2O2_response
Mathematical modeling of H2O2 diffusion, degradation and stimulation of global oxidative stress response
MSKCC_Paeru_isolates_azt_resistance_PLoSComputBiol19_Scripts
Python codes for building integrative metabolic models to understand metabolic consequences of NalD mutation
Oral_bacterial_manuscript_initial_submission
Codes to regenerate figures in the marker hypothesis manuscript
RLQ_analysis
Examples of RLQ analysis for the Xavier lab
statrethinking_winter2019
Statistical Rethinking course at MPI-EVA from Dec 2018 through Feb 2019