lianzhh's repositories
easy_EzBioCloud
batch upload 16S rRNA sequences search against EzBioCloud's database for identification
analysis-salt-responsive
Analysis of 16S sequencing data for paper "Salt-responsive gut commensal modulates TH17 axis and disease"
awesome-go-China
A curated list of awesome Go frameworks, libraries and software written by Ethnic Chinese.
canu
A single molecule sequence assembler for genomes large and small.
GoogleSearchCrawler
a tool for crawl Google search results
I-VIP
Integron Visualization and Identification Pipeline
Integron_Finder
Bioinformatics tool to find integrons in bacterial genomes
intervene-shiny
An interactive Shiny App for UpSet plots, Venn diagrams and Pairwise heatmaps
ISfinder-sequences
Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biotoul.fr/)
Krona
Interactively explore metagenomes and more from a web browser.
LCAStar
Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree
megan-ce
MEGAN Community Edition
ncbitax2lin
Convert NCBI taxonomy dump into lineages
PAPER_LeeSorensen_ISMEJ_2017
Workflows and R scripts for Lee and Sorensen et al
PhaGCN
GCN classifier for phage taxanomy classification
PhaTYP
PhaTYP: Predicting lifestyle for bacteriophages using BERT
PlasFlow
Software for prediction of plasmid sequences in metagenomic assemblies
plasmidminer
:mag: in silico plasmid extraction
r4ds
R for data science
rgi
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
tiptoft
Predict plasmids from uncorrected long read data
ViPTreeGen
a command line tool for viral proteomic tree generation, part of the ViPTree project: http://www.genome.jp/viptree