liangzhendong123

hover_net

Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.

kmcuda

Large scale K-means and K-nn implementation on NVIDIA GPU / CUDA

ACROBAT

BCSS

Use this to download all elements of the BCSS dataset described in: Amgad M, Elfandy H, ..., Gutman DA, Cooper LAD. Structured crowdsourcing enables convolutional segmentation of histology images. Bioinformatics. 2019. doi: 10.1093/bioinformatics/btz083

Deformable-ConvNets

Deformable Convolutional Networks

dgl

The official repo is https://github.com/dmlc/dgl . THIS IS A FORK.

google-research

Google Research

GPT-GNN

Code for KDD'20 "Generative Pre-Training of Graph Neural Networks"

graphtransformer

Graph Transformer Architecture. Source code for "A Generalization of Transformer Networks to Graphs", DLG-AAAI'21.

Grassmannian_Fusion

histocartography

Histocartography is a framework bringing together AI and Digital Pathology

mae

PyTorch implementation of MAE https//arxiv.org/abs/2111.06377

mifs

Parallelized Mutual Information based Feature Selection module.

miso

:ramen: A tasty Haskell front-end framework

MoNuSAC

This repository contains my implementations of the algorithms which MoNuSAC participants could use for data preparation to train their models at ISBI 2020.

MSHIR

normalized_gradient_field_pytorch

pytorch implementation of registration metric Normalized Gradient Field

OpenGlue

Open Source Graph Neural Net Based Pipeline for Image Matching

PyTorch-GAN

PyTorch implementations of Generative Adversarial Networks.

pytorch-image-models

PyTorch image models, scripts, pretrained weights -- ResNet, ResNeXT, EfficientNet, EfficientNetV2, NFNet, Vision Transformer, MixNet, MobileNet-V3/V2, RegNet, DPN, CSPNet, and more

pytorch-msssim

Fast and differentiable MS-SSIM and SSIM for pytorch.

RegTR

End-to-end Point Cloud Correspondences with Transformers

RMI

This is the code for the NeurIPS 2019 paper Region Mutual Information Loss for Semantic Segmentation.

SCF-Net

SCF-Net: Learning Spatial Contextual Features for Large-Scale Point Cloud Segmentation (CVPR2021)

SFG

Structural feature guided convolutional neural network for histological image registration

SlideGraph

SOAPdenovo-Trans

SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from rice and mouse.

spatial-omics

A data container for spatial omics data

tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

voxelmorph

Unsupervised Learning for Image Registration