liampshaw

rmsFinder

Scripts for finding restriction-modification systems in bacterial genomes.

mcroni

Scripts for finding and processing promoter variants upstream of mcr-1

mobile-gene-regions

Analysing the genomic context of mobile genes

Millionaire-coughing

Statistical analysis of coughing patterns during Charles Ingram's appearance on 'Who Wants To Be A Millionaire?'

Pathogen-host-range

R-M-and-plasmids

vettius-valens

Data analysis of the theories of the 2nd century astrologer Vettius Valens

CoV-homoplasy-filtering

Methods for filtering out spurious homoplasic sites for SARS-CoV-2 assemblies.

pr_hype

Analysis of publicly available data from Sumner et al. (2014): http://www.bmj.com/content/349/bmj.g7015

beta-lactamases

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics-1

Utilities written for bioinformatics

collectors

The OpenTrials data collectors + warehouse schema definition.

blah

BREX-phage-motifs

ID-microbiome-practical

A practical reanalysing a microbiome dataset from Palleja et al. (2018)

lefse_scripts

Tools for converting data for LEfSe analysis

liampshaw.github.io

Build a Jekyll blog in minutes, without touching the command line.

mashCluster

mcr1-regulatory-variants

Analysis of regulatory region of mcr-1

neotree-android

NeoTree - Android client

oxf-dtp-project-2022

pangraph-tutorials

Tutorials for using pangraph

pangraph_annotations

Promotech

Machine-learning-based general bacterial promoter prediction tool.

Smil-Growth-2019

Datasets from Growth (2019) by Vaclav Smil with reproducible fits

Trieste-2023-project

group project on palindromes in plasmids