lhon's repositories

dappled

build and run deployable Jupyter notebooks

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dappled-core

Supporting package for creating and running Dappled notebooks

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django-inviting

Registration through invitations

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iterative-mapping-phasing

A bioinformatics workflow for haplotype phasing using PacBio/Cergentis data

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aldy

Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes

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canu

A single molecule sequence assembler for genomes large and small

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common-workflow-language

Repository for the CWL standards. Use https://cwl.discourse.group/ for support ๐Ÿ˜Š

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FALCON

FALCON: experimental PacBio diploid assembler

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hapcut

program for haplotype phasing from sequence reads and related tools

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HBAR-DTK

Hierarchical based assembler development toolkit

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kineticsTools

Tools for detecting DNA modifications from single molecule, real-time sequencing data

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machine-learning-yearning

Machine Learning Yearning book by ๐Ÿ…ฐ๏ธ๐“ท๐“ญ๐“ป๐“ฎ๐”€ ๐Ÿ†–

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MiddleClick-Catalina

Middleclick with triple click/tap for MacBook trackpad and Magic Mouse.

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sh

Python subprocess interface

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snpedia-23andme

Analyse a genome file from 23andMe using the data on snpedia.com

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targeted-phasing-consensus

A workflow for phasing genes using long fragment target capture data

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tornadomail

Django mail system ported to tornado and made asynchronous

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