Laurent Guerard's repositories
PPTAnimation2PDF
Split your Powerpoint animation to PDF with each animation on a different page.
3DGolgiCharacterization
Fiji script to calculate Golgi Intensity and volume in 3D
bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
biop-bash-scripts
Bash scripts to simplify your life (let's hope so!)
clij2
GPU-accelerated image processing for everyone
ContextDots
A PowerPoint Macro to see the presentation's progress
git_scripts
Diverse scripts used for Git
ijl-utilities-wrappers
Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
ijp-LaRoMe
some useful function to get Label from ROIs and vice versa , and more!
ImageJ
Public domain software for processing and analyzing scientific images – a.k.a. ImageJ 1.x
imagej.github.io
GitHub Pages for ImageJ
LambdaStackKymograph
Kymograph analysis for Lambda stack in ImageJ
mcib3d-core
mcib3d core library for 3D ImageJ suite
multiview-reconstruction
Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data
omnipose
Omnipose: a high-precision solution for morphology-independent cell segmentation
Stitching
Fiji's Stitching plugins reconstruct big images from tiled input images.
SwissBIAS.github.io
Website for the SwissBIAS network: Swiss BioImage Analysts's network
TrackMate-StarDist
StarDist detection as TrackMate detectors.
Vortex
Vortex Development
vpt-core
Core components of the Vizgen Post-processing Tool