lf-achyutpkl / uniprot-meta

Uniprot Meta

Developer Setup

Make sure you have node, npm, yarn and polymer-cli installed. Install node and npm using your favorite tool. After that,

$ npm install -g polymer-cli

Install dependencies:

$ yarn

Copy Firebase config to firebase.config file.

Running the app:

$ yarn start

Usage

This guide contains information on available components and their props.

1) MetaBase <meta-base>

Props

1. label: STRING A label fot the component.
2. metaId: STRING ID of the metadata to be displayed.
3. allowEdit: BOOLEAN To control visibility of edit button.
4. showProtocol: BOOLEAN To control visibility of Protocol tab.
5. showData: BOOLEAN To control visibility of Data tab.

Note: All props are undefined by default

Example

  <meta-base
    allowEdit
    showProtocol
    label="GeneID"
    metaId="068aae74-b733-487a-8b8b-48cc6d86113j"
  >
    <img src="../area_graph.png"/>
  </meta-base>

2) UniprotMeta <uniprot-meta>

Props

1. metaUrl: STRING URL to fetch meta data.
2. fieldPath: STRING Path of the field present in the response of metaUrl. The value obtained from the path is used to display extra information when hovered on info icon.
3. detailUrl: STRING The URL to redirect to when clicked on the info icon.
4. validate: BOOLEAN To specify if any validation is required.

Note: All props are undefined by default

Example

<uniprot-meta
  validate
  metaUrl="https://www.ebi.ac.uk/proteins/api/proteins/P04629" 
  fieldPath="protein.recommendedName.fullName.value" 
  detailUrl="http://www.ncbi.nlm.nih.gov/pubmed/1281417"
 >
  <input name="geneID" type="text" />
</uniprot-meta>

EDAM Oncology: https://bioportal.bioontology.org/ontologies/EDAM?p=classes&conceptid=topic_2640