Tommaso Biancalani's repositories
a-large-image-tiler
(Python3, PyQt5) GUI software to tile large images. Designed to image 96-well plates used in wet labs.
disentangling-pathogens-SM
Supplementary Material (R notebook) for the paper "Disentangling bacterial invasiveness from lethality in an experimental host-pathogen system"
4Dsurvival
Deep learning cardiac motion analysis for survival prediction
CairoSVG
CairoSVG is a SVG converter based on Cairo. It can export SVG files to PDF, PostScript and PNG files.
chunkwm
Tiling window manager for macOS based on plugin architecture
classification_models
Classification models trained on ImageNet. Keras.
Datasets-analysis
My analyses/ML predictions for common datasets publicly available from the Internet
Deep_reinforcement_learning_Course
Implementations from the free course Deep Reinforcement Learning with Tensorflow
few-shot
Repository for few-shot learning machine learning projects
ICIAR2018
Two-Stage Convolutional Neural Network for Breast Cancer Histology Image Classification. ICIAR 2018 Grand Challenge on BreAst Cancer Histology images (BACH)
keras-applications
Reference implementations of popular deep learning models.
keras-contrib
Keras community contributions
lewlin.github.io
My academic webpage
lewlin.github.iOLD
My personal/academic webpage
material_darker_mpl
matplotlib style file for the material darker theme
models
Models and examples built with TensorFlow
MouseBrainAtlas
A system for building mouse brain atlas from histology series
My-Python
Cools things about Python that surprised me, coming from a C background
NMFreg_tutorial
A tutorial on NMFreg applied to cerebellum data.
openstreetmap-website
The Rails application that powers OpenStreetMap
scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
score_sde
Official code for Score-Based Generative Modeling through Stochastic Differential Equations (ICLR 2021, Oral)
score_sde_pytorch
PyTorch implementation for Score-Based Generative Modeling through Stochastic Differential Equations (ICLR 2021, Oral)
segmentation_models
Segmentation models with pretrained backbones. Keras.
tf_unet
Generic U-Net Tensorflow implementation for image segmentation
voxelmorph
Unsupervised Learning for Image Registration