Leland Taylor's repositories
marker_gene_db
This repository contains lists of various marker genes.
variantBedOverlap
Calculates the overlap of variants in LD with features from BED files
cellBrowser
Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
conda-letaylor
Conda recipes
docker-letaylor-travis
Docker images
dropSeqPipe
A SingleCell RNASeq pre-processing snakemake workflow
gwas-lecture
Lectures on Genome Wide Association Studies (GWAS) using Python, Limix and Jupyter Noteboos
nfCore_scRNA
Combined Repo of the Cellbender, Deconvolution and QC metrics placed in nfCore template for transferability between institutions and different HPC setups.
performance
:muscle: Models' quality and performance metrics (R2, ICC, LOO, AIC, BF, ...)
scanpy_usage
Scanpy use cases.
scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
spacexr
Spatial-eXpression-R: Cell type identification (including cell type mixtures) and cell type-specific differential expression for spatial transcriptomics
TwoSampleMR
R package for performing 2-sample MR using MR-Base database