leonardosepulveda's repositories
3D-printing
Designs for 3D printed parts that were developed in the Zhuang Lab.
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allen_brain
Code for the preparation, design, and analysis of MERFISH experiments of the brain samples sent from the Allen institute.
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conda-envs
Files used to restore conda environments. I create the environments using "conda env export -n env_name > env_name.yml"
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imaging-settings
Setting files for Hal, Kilroy Steve and Dave of imaging experiments in zhuang lab microscopes
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merfish-parameters
Collection of scripts to launch MERlin jobs
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MERFISH_analysis
Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.
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MERlin
MERlin is an extensible analysis pipeline applied to decoding MERFISH data
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storm-analysis
STORM movie analysis code
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storm-control
Microscope control software
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