lennijusten

transformers

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

langchain

🦜🔗 Build context-aware reasoning applications

openai-python

The official Python library for the OpenAI API

peft

🤗 PEFT: State-of-the-art Parameter-Efficient Fine-Tuning.

evals

Evals is a framework for evaluating LLMs and LLM systems, and an open-source registry of benchmarks.

lm-evaluation-harness

A framework for few-shot evaluation of language models.

langgraph

Build resilient language agents as graphs.

BioGPT

promptsource

Toolkit for creating, sharing and using natural language prompts.

test

Measuring Massive Multitask Language Understanding | ICLR 2021

evo

Biological foundation modeling from molecular to genome scale

inspect_ai

Inspect: A framework for large language model evaluations

dorado

Oxford Nanopore's Basecaller

opentrons

Software for writing protocols and running them on the Opentrons Flex and Opentrons OT-2

spotify2am

Import your Spotify library into Apple Music

Spotlistr

🎧 Convert Anything to a Spotify Playlist!

bifrost

Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs

mag

Assembly and binning of metagenomes

pylabrobot

An interactive & hardware agnostic interface for lab automation

coscientist

taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data

wmdp

WMDP is a LLM proxy benchmark for hazardous knowledge in bio, cyber, and chemical security. We also release code for RMU, an unlearning method which reduces LLM performance on WMDP while retaining general capabilities.

InstaNovo

De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments

BioCoder

LitQA

LitQA Eval: A difficult set of scientific questions that require context of full-text research papers to answer

auto-gpt

An experimental open-source attempt to make GPT-4 fully autonomous.

metawibele

MetaWIBELE: Workflow to Identify novel Bioactive Elements in microbiome

taxtriage

TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomic NGS data. This flexible tool was developed with various use-cases of mNGS in mind.

mgs-workflow

PyLabRobot_LLM_Example