lenamax2355

cockroach

CockroachDB — the cloud native, distributed SQL database designed for high availability, effortless scale, and control over data placement.

presto

The official home of the Presto distributed SQL query engine for big data

sqlmodel

SQL databases in Python, designed for simplicity, compatibility, and robustness.

hudi

Upserts, Deletes And Incremental Processing on Big Data.

sqlpad

Web-based SQL editor. Legacy project in maintenance mode.

UK_Biobank_GWAS

Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

trino-python-client

Python client for Trino

trino-the-definitive-guide

Resource for the book Trino: The Definitive Guide (and formerly Presto: The Definitive Guide)

OCT-Converter

Tools for extracting the raw optical coherence tomography (OCT) and fundus data from proprietary file formats.

Frank-Kanes-Taming-Big-Data-with-Apache-Spark-and-Python

Frank Kane's Taming Big Data with Apache Spark and Python, published by Packt

tofu

Tofu is a Python tool for generating synthetic UK Biobank data.

ukbiobank-resources

A curated list for preprocessing, cleaning, mapping and analyzing UK Biobank data.

ukbrest

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

ukbb_parser

A Python module for loading phenotypic and genetic data from the UK Biobank.

ehr-rwe

Weak supervision methods for extracting real world evidence from EHRs

BiobankRead-Bash

Python scripts to extract and pre-process UKB data

omop-etl

ETL Tool for converting datasets to OMOP CDM

phemap

Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records

ukbschemas

Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi

BiobankRead

Python for UK Biobank data analysis. Author: saphir746

Genomic-Data-Science-Specialization

Genomic Data Science Specialization helps in learning genomic data science including Python, R, Bioconductor, and Galaxy. This is offered in coursera from John Hopkins University

BiobankPhenotypes

ETL-Synthea-Python

ETL from Synthea to OMOP format using python pandas

datalad-ukbiobank

Resources for working with UKBiobank as a DataLad dataset

omero.biobank

Biobank: large scale biomedical computation on OMERO

real-world-data-analysis

ohdsi-etl-abucasis

Transformation scripts for Inclivia's Abucasis EHR data | BigData@Heart consortium

Time-Series-Prediction

Solve time series and forecasting problems in TensorFlow, Prepare data for time series learning using best practices, Explore how RNNs and ConvNets can be used for predictions, Build a sunspot prediction model using real-world data

WikiMedMap

nextstrain-hcov-19

Genomic Epidemiology of Novel Coronavirus (COVID-19) | Nextstrain