Richard T. Gray's repositories
Chlamydia_incidence_model
This project contains the code for a model to estimate trends in chlamydia incidence in Australia.
wsl-config
My personal Windows Subsystem for Linux (WSL) config and script files
Analysis-with-Programming
Repository of my blog
ART_For_Temporary_Residents
Impact of providing ART to PLHIV who are ineligible for Medicare in Australia
capitalIn21stCenturyinR
Piketty in R
covasim
COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions
datasharing
The Leek group guide to data sharing
dirp
A bash script for managing dirs, pushd, and popd across terminals and systems.
epiforecasts.github.io
central website
EpiNow
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
EpiNow2
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
HCV_prison_model
A mathematical model for simulating HCV treatment and prevention programs in the prison setting.
labs
Rmd source files for the HarvardX series PH525x
LeftysRpkg
Personal R package containing functions I find useful day to day (under development)
LeftysRstuff
Personal Rstudio and R files for personal use
PrEPSTI
Individual-based, site-specific simulator of STI transmission
readingpapers
A guide to reading scientific papers
scholmd
Learn how to use scholarly markdown
SEI-SEIR_Arboviruses
Climate-based mechanistic model of arbovirus transmission in Ecuador and Kenya.