leezx

ConSurf-StandAlone

Stand Alone version of ConSurf with detailed tutorial - (installation + database + usage)

RToolbox

Toolsets for bioinformatics data analysis (R package)

atac-seq-pipeline

ENCODE ATAC-seq pipeline

bioinfo-pipelines

classical pipelines in bioinformatics

chip-seq-pipeline2

ENCODE ChIP-seq pipeline

simpleCloud

store some simple PDF files

ArchivedTools

some previous finished tools

bt2m

A iteratively bifurcated clustering method for single-cell sequencing

CRACI

Condition-based Regulatory Architecture and Causality Inference from Single-Cell Data

CRC-hub

A hub of resources to study CRC.

cut-run-pipeline

a standard analytic pipeline for cut&run data

ENSatlas

ENS Atlas database

Exp_protocols

Common experiment protocols in my lab

scGRN

A tool for gene regulatory network (GRN) construction and visualization

gatk4-jupyter-notebook-tutorials

This repository contains Jupyter Notebooks containing GATK Best Practices Workflows

GWA_tutorial

A comprehensive tutorial about GWAS and PRS

leezx.github.io

Personal website

MBSIT

marker-based subgroup identification tool

ModuleSelection

find the gene structure in a expression matrix

scvelo_notebooks

TI

trajectory inference methods

VariantToGene

Genomic predictors and Annotation predictors

WGS_Pipeline_BestPractice

WGS_Pipeline_BestPractice