Zhixin Li, PhD's repositories
ConSurf-StandAlone
Stand Alone version of ConSurf with detailed tutorial - (installation + database + usage)
atac-seq-pipeline
ENCODE ATAC-seq pipeline
bioinfo-pipelines
classical pipelines in bioinformatics
chip-seq-pipeline2
ENCODE ChIP-seq pipeline
simpleCloud
store some simple PDF files
ArchivedTools
some previous finished tools
bt2m
A iteratively bifurcated clustering method for single-cell sequencing
CRC-hub
A hub of resources to study CRC.
cut-run-pipeline
a standard analytic pipeline for cut&run data
ENSatlas
ENS Atlas database
Exp_protocols
Common experiment protocols in my lab
scGRN
A tool for gene regulatory network (GRN) construction and visualization
gatk4-jupyter-notebook-tutorials
This repository contains Jupyter Notebooks containing GATK Best Practices Workflows
GWA_tutorial
A comprehensive tutorial about GWAS and PRS
leezx.github.io
Personal website
MBSIT
marker-based subgroup identification tool
ModuleSelection
find the gene structure in a expression matrix
VariantToGene
Genomic predictors and Annotation predictors
WGS_Pipeline_BestPractice
WGS_Pipeline_BestPractice