leeyang

DRfold

ResPRE

ResPRE is an algorithm for protein residue-residue contact-map prediction

arc-pytorch

PyTorch implementation of Attentive Recurrent Comparators

pytorchlearn

betafold

bl-dca

CCMgen

choix

Inference algorithms for models based on Luce's choice axiom

logisticMF

Matrix Factorization for categorical data

missForest

missForest is a nonparametric, mixed-type imputation method for basically any type of data for the statistical software R.

pylbfgs

:mountain_cableway: Python/Cython wrapper for liblbfgs

cv

TeX files for my curriculum vitae

DCNv2

Deformable Convolutional Networks v2 with Pytorch

deepcontact

fork from https://github.com/largelymfs/deepcontact

examples

A set of examples around pytorch in Vision, Text, Reinforcement Learning, etc.

hh-suite

Remote protein homology detection suite.

leeyang.github.io

memory-efficient-attention

Memory Efficient Attention (O(sqrt(n)) for Jax and PyTorch

ML-From-Scratch

Machine Learning From Scratch. Bare bones Python implementations of machine learning models and algorithms with a focus on accessibility. Aims to cover everything from data mining to deep learning.

nlp-stuff

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

prefpy

Collection of Python scripts for preference aggregation, estimation, and generation. Currently under initial development

PythonCall.jl

Python and Julia in harmony.

RaptorX-Contact

Deep residual neural network for protein contact/distance prediction developed by Xu group

rgn

Recurrent Geometric Networks for end-to-end differentiable learning of protein structure

tensorcode

tensorlayer

TensorLayer: Deep Learning and Reinforcement Learning Library for TensorFlow.

tensorlayer_learning

test

word2vec-keras-in-gensim

word2vec uisng keras inside gensim