leekgroup / polyester_code

code used for analysis presented in polyester paper

code for Polyester paper

Reproduce our updated Polyester paper (available on BiorXiv) with the code/data in this repository!

The document that I reproduced for you is at this link. (That's just a rendered version of polyester_manuscript.html, which lives in this repo).

If you'd like to reproduce the document yourself, clone this repository, read the introduction of polyester_manuscript.Rmd carefully, download/create all the necessary data files, and then use knitr to create the html output: from within R, with the repository main directory as the working directory, run:

library(knitr)
knit2html('polyester_manuscript.Rmd')

The paper also includes three small analyses as supplements. The.Rmd files with code in them and corresponding rendered html are in this repository. You can view the supplements at these links:

• ebseq.Rmd: rendered html
• dataDrivenEst.Rmd: rendered html
• length_simulation.Rmd: rendered html