leekgroup / derfinder

R package for DER Finder, a method for differential expression analysis of RNA-seq data

http://biostatistics.oxfordjournals.org/content/early/2014/01/06/biostatistics.kxt053.short?rss=1

leekgroup/derfinder Issues

Regions are not detected as expressed
Updated 5 years ago
derfinder 1.7.16
Closed 8 years ago2
Make Docker container for reproducing this analysis
Updated 10 years ago1
package locfdr was removed from CRAN
Closed 10 years ago2
makeDb error when running analysis_code.R
Closed 10 years ago3
package RSQLite.extfuns was removed from CRAN
Closed 10 years ago1
exons length error from stopifnot() call in getFlags.R
Closed 10 years ago3
makeTranscriptDbFromUCSC() returns "'data' must be of a vector type" error
Updated 10 years ago
*cuff-UDPATED.rda files missing
Closed 10 years ago2
Where is tophatY-updated?
Closed 10 years ago2
fix dependencies
Updated 10 years ago1
request to modify countReads.py to include strand specific information
Closed 11 years ago3
Error in countReads.py
Closed 11 years ago2