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Le Binh (lebinh190998)

lebinh190998

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Le Binh's starred repositories

dash

Data Apps & Dashboards for Python. No JavaScript Required.

Language:PythonLicense:MITStargazers:21402Issues:423Issues:1807

aws-cli

Universal Command Line Interface for Amazon Web Services

Language:PythonLicense:NOASSERTIONStargazers:15541Issues:573Issues:4632

libcuckoo

A high-performance, concurrent hash table

Language:C++License:NOASSERTIONStargazers:1604Issues:75Issues:120

glumpy

Python+Numpy+OpenGL: fast, scalable and beautiful scientific visualization

Language:PythonLicense:BSD-3-ClauseStargazers:1238Issues:38Issues:209

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

Language:TypeScriptStargazers:852Issues:28Issues:9

pyGenomeTracks

python module to plot beautiful and highly customizable genome browser tracks

Language:PythonLicense:GPL-3.0Stargazers:768Issues:30Issues:209

higlass

Fast, flexible and extensible genome browser.

Language:JavaScriptLicense:MITStargazers:311Issues:23Issues:577

mOTUs

motus - a tool for marker gene-based OTU (mOTU) profiling

Language:PythonLicense:GPL-3.0Stargazers:147Issues:12Issues:100

EukRep

Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets

Language:PythonLicense:MITStargazers:69Issues:2Issues:20

genomeGTFtools

convert various features into a GFF-like file for use in genome browsers

Language:PythonStargazers:69Issues:5Issues:15

genome-maps

An open-source high-performance web-based HTML5 genome browser. Genome Maps can be customized and allow browsing user data such as BAM and VCF files among other formats.

Language:HTMLLicense:GPL-2.0Stargazers:39Issues:25Issues:34

DiscoSnp

DiscoSnp is designed for discovering all kinds of SNPs (not only isolated ones), as well as insertions and deletions, from raw set(s) of reads.

Language:PythonLicense:AGPL-3.0Stargazers:38Issues:7Issues:32

miga

MiGA: Microbial Genomes Atlas

Language:RubyLicense:Artistic-2.0Stargazers:31Issues:8Issues:141

phenopolis_genomics_browser

Python API and React frontend for the Phenopolis Genomics Browser

Language:SCSSLicense:MITStargazers:31Issues:4Issues:208

bioView

Readability enhancement tool for bioinformatics data file format

Language:NimLicense:GPL-3.0Stargazers:29Issues:5Issues:2

tnt.genome

Minimal genome browser library created with TnT

Language:JavaScriptLicense:Apache-2.0Stargazers:18Issues:4Issues:3

docker_ucsc_genome_browser

UCSC Genome Browser Docker Image

Language:DockerfileStargazers:16Issues:3Issues:1

genome-browser

A lightweight Python graphing API for genomic features

Language:PythonLicense:MITStargazers:15Issues:5Issues:0

GenomeBrowsers.jl

Language:JuliaLicense:NOASSERTIONStargazers:10Issues:13Issues:1

genomeview

GenomeView is a stand-alone genome browser and editor. It provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more. Many standard file formats are supported and new functionality can be added using a plugin system.

Language:JavaLicense:GPL-3.0Stargazers:7Issues:3Issues:3

djangocms-genome-browser

A Django app for incorporating a Dalliance genome browser into a Django site with django CMS-specific features

Language:PythonLicense:BSD-3-ClauseStargazers:6Issues:2Issues:0

STAR-genome-browser

Language:PHPLicense:GPL-2.0Stargazers:5Issues:0Issues:0

genomics-fetchers

Common back-end code for Browser-based genomics.

Language:JavaScriptLicense:BSD-2-ClauseStargazers:5Issues:4Issues:0

targetGenomeBrowser

Minimal genome browser created for CTTV

Language:JavaScriptLicense:NOASSERTIONStargazers:4Issues:15Issues:0

genome-browsers

Introductory course on visualising and manipulating genomic data

Language:CSSStargazers:3Issues:0Issues:0