leaxsd / primer-genomics

A reproduction of the primer tutorial in deep learning genomics proposed in Nature Genetics (2018) in Pytorch.

Deep Learning in Genomics Primer (PyTorch)

A reproduction of the primer tutorial in deep learning genomics proposed in Nature Genetics (2018) in Pytorch.

For details, please refer to the original notebook here.

Files Structure

src/
├── data
│   ├── accuracy.npy
│   ├── models
│   │   ├── best_model.pt
│   │   └── last_model.pt
│   ├── precision.npy
│   ├── recall.npy
│   ├── test_label.npy
│   ├── test_pred.npy
│   ├── train_loss.npy
│   └── val_loss.npy
├── metrics.py
├── model.py
├── results.ipynb
├── run.py
├── train.py
└── tutorial.py

Results

check here : results.ipynb