Lucas Czech's repositories
grenedalf-paper
Code for tests and benchmarks of our paper on grenedalf
htscodecs
Custom compression for CRAM and others.
grenepilot-paper
Scripts and analyses for the GrENE-net pilot dataset
ratatosk
Snakemake pipeline for phylogenetic placement of metagenomic sequences
swarm
A robust and fast clustering method for amplicon-based studies
snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
greneselect
Snakemake playground for selection analyses in evolve & resequence experiments
dinoflagellate-paper
Code repository for the dinophyte DNA in tropical rain forest soils paper
PoolHMM
Pool-HMM mirror with Mac support (versions >= 1.4.3)
popoolation2
Forked from https://sourceforge.net/p/popoolation2/
popoolation
Forked from https://sourceforge.net/p/popoolation/
sparsepp
A fast, memory efficient hash map for C++
language-cpp
C++ support in Atom
zstr
A C++ header-only ZLib wrapper
genesis-gappa-paper
Scripts and Tests for the Application Note of genesis and gappa
placement-methods-paper
Accompanying code repository with scripts, programs and data for our papers.
CLI11
Command line parser for C++11
papara_nt
new codebase of the PaPaRa algorithm
come_2017
Some sample files for the CoME2017 course to play around with.
flat
Flat containers for C++
lucas-dark-syntax
My syntax scheme for atom.
pllprac
Programming Practical of the Exelicis Lab using the Phylogenetic Likelihood Library