lczech / grenedalf

Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

lczech/grenedalf Issues

Compilation problem during NIX packaging
Closed 21 days ago23
Unidentifed issues when creating sync file
Closed 2 months ago6
Sample grouping for diversity calculation
Closed 2 months ago16
subsampling vs coverage thresholds
Updated 3 months ago5
diversity calculations (pi) seem to calculate based on windows in an unexpected way
Updated 3 months ago1
BAMs vs VCFs for pooled mitochondrial variants using Kofler or Karlsson
Updated 7 months ago3
How to understand the statistics of the screen output？
Updated 7 months ago1
Question: How does the SNP window work?
Updated 8 months ago5
error regarding vcf file from PoolSNP
Updated 8 months ago3
Dxy calcuations
Updated 8 months ago1
Suggestion: Include MASK files for correct calculation of per-site averages
Updated 8 months ago3
Problem compilation
Closed 9 months ago9
compilation warning with gcc/12.3.0
Closed 9 months ago1
install errors
Closed 9 months ago10
Diversity by chromosomes output file - tiny issue?
Closed 9 months ago4
Inconsistencies between `--sample-name-list` and `--filter-samples-exclude`
Closed 10 months ago3
Unordered chromosomes error
Closed a year ago2
Suggestion to include "missing data" codes
Closed a year ago11
output extension is csv, but actually "\t"
Closed a year ago4
Open MP issue
Closed a year ago15