lch14forever

followers

following

stars

Massachusetts General Hospital/Broad Institute

US

lichenhao.netlify.com

Organizations

CSB5

Chenhao Li's starred repositories

fucking-algorithm

刷算法全靠套路，认准 labuladong 就够了！English version supported! Crack LeetCode, not only how, but also why.

Language:Markdown124401 2310 827

awesome-actions

A curated list of awesome actions to use on GitHub

CC0-1.024472 301 41

drive

Google Drive client for the commandline

Language:GoApache-2.06660 173 827

git-split-diffs

Syntax highlighted side-by-side diffs in your terminal

Language:TypeScriptMIT2576 11 29

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

Language:Shell1127 85 11

geomtextpath

Create curved text paths in ggplot2

Language:RNOASSERTION621 5 80

mindr

an R package which converts markdown files (.md, .Rmd) into mindmaps (brainstorms)

Language:RGPL-3.0568 24 23

nomino

Batch rename utility for developers

Language:RustApache-2.0555 5 16

pggb

the pangenome graph builder

Language:ShellMIT344 13 161

ggcharts

Get You to Your Desired Plot Faster

Language:RNOASSERTION289 16 57

microeco

An R package for data analysis in microbial community ecology

Language:RGPL-3.0182 4 339

lemon

🍋 Lemon --- Freshing up your ggplots

Language:RGPL-3.0181 8 28

drawCell

R package to create cell pictures.

Language:R129 4 9

projmgr

R-based project management tools

Language:RNOASSERTION122 4 26

ggpp

Grammar of graphics extensions to 'ggplot2'

Language:HTML118 3 37

Tools-Microbiome-Analysis

A list of R environment based tools for microbiome data exploration, statistical analysis and visualization

Language:CSS108 12 5

MGEfinder

A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.

Language:PythonMIT102 3 48

micom

Python package to study microbial communities using metabolic modeling.

Language:PythonApache-2.083 5 42

metapi

A general metagenomics data mining system focus on robust microbiome research

Language:PythonGPL-3.054 8 20

STRONG

Strain Resolution ON Graphs

Language:PythonMIT44 8 116

sepia

taxonomic classifier based on the kraken2 algorithms and more

Language:RustGPL-3.044 5 12

Microbiome-conferences-c

This repo collects the list of conferences/meetings/workshops etc. related to microbiome science and tools.

orthogene

🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️

Language:R39 2 38

MicrobiomeProfiler

:microbe: A shiny package for microbiome functional enrichment analysis

Language:R33 4 3

treedataverse

Meta package for processing and visualizing tree with data

Language:R26 4 1

BioNextflow

A collection of modules and sub-workflows for Nextflow

Language:NextflowGPL-3.025 8 8

RmarkdownTips

Collection of my tweets with RMarkdown/Quarto tips and tricks

Language:HTMLNOASSERTION24 4 1

MIMOSA

Model-based Integration of Metabolite Observations and Species Abundances

Language:R23 9 2

elementalist

This repository provides extra theme elements as an extension of ggplot2.

Language:RNOASSERTION23 3 3

ggpmisc

:exclamation: This is a read-only mirror of the CRAN R package repository. ggpmisc — Miscellaneous Extensions to 'ggplot2'. Homepage: https://docs.r4photobiology.info/ggpmisc/, https://github.com/aphalo/ggpmisc Report bugs for this package: https://github.com/aphalo/ggpmisc/issues

Language:R1600