lbgbox's repositories
applied-bioinformatics-iab2
An Introduction to Applied Bioinformatics, 2nd Edition
APT
Animal Part Tracker
BiaPy
Open source Python library for building bioimage analysis pipelines
Data-Science-For-Beginners
10 Weeks, 20 Lessons, Data Science for All!
decoupler-py
Python package to infer biological activities from omics data using a collection of methods.
fq-segmentation
Wrapper code for segmentation of cells and nuclei with Cellpose.
Mask_RCNN
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
ML-YouTube-Courses
đź“ş A place to discover the latest machine learning courses on YouTube.
napari-chatgpt
A napari plugin to process and analyse images with chatGPT!
Online_R_learning
Online R learning for applied statistics
Patch-GCN
Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
python-bioimage-analysis-tutorial
The new and improved 2018 version of the EMBL Python BioImage Analysis Tutorial. Now finally in python 3!
python_biologist
Python Programming for Biologists
qupath-extension-cellpose
an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
RNAlysis
RNA sequencing analysis software
RS-FISH
Tool for precise, interactive, fast and scalable FISH spot detection
scientific-visualization-book
An open access book on scientific visualization using python and matplotlib
scikit-learn
scikit-learn: machine learning in Python
scRNAseq_analysis_vignette
Tutorial for scRNA-seq data analysis beginners using R
single-cell-best-practices
https://www.sc-best-practices.org
single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
sitk-ibex
Aligning images acquired with the IBEX microscopy imaging technique
spark
Apache Spark - A unified analytics engine for large-scale data processing
stereopy
A toolkit of spatial transcriptomic analysis.
xDbit_toolbox
Analysis pipeline for multiplexed Deterministic Barcoding in Tissue (xDbit)