Laura Žigutytė's repositories
organoid-segmentation-ML
Supplementary Material for the master thesis on segmentation of early mESC organoid 3D+time data with fluorescently labelled membranes
end2end-WSI-preprocessing
End-to-end pipeline to go from raw H&E slides to normalised extracted features for training
diffae
Official implementation of Diffusion Autoencoders
napari-accelerated-pixel-and-object-classification
GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
napari-clusters-plotter
A plugin to use with napari for clustering objects according to their properties.
napari-clusters-plotter-example-notebooks
This repository hosts jupyter notebooks with examples of napari-clusters-plotter usage
napari-segment-blobs-and-things-with-membranes
A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.
napari-skimage-regionprops
Feature extraction for labeled objects in images using regionprops from scikit-image
stardist-napari
StarDist plugin for napari