layerfMRI's repositories
repository
This does everything that I need. Layering, smoothing-within layers, layer-connectivity, RF-coil,combination, 2D-dridding of layers and columns, preprocessing, BOLD correction of VASO, motion correction, layering etc. Mostly C++ with a bit of Matlab here and there.
Sequence_Github
VB17 Sequence Protocols. A collection of pdfs of sequence protocols that where used in my publications. Mostly VASO, Multi-echo, SMS, 3D-EPI, low resolution up to sub-millimeter fMRI
Topology_tools
This is set of -> LAYNII programs -> ANTS alignement scripts -> AFNI processing scripts -> SPM motion correction scripts -> ODIN programs used for the mesoscale analysis of an fMRI study from Huber et al. 2019 https://www.biorxiv.org/content/10.1101/457002v2
Educational-K-space-program
This little repository is designed as a play ground to get an intuititve understanding of k-space and most of the artifacts in EPI
hackathon_proceedings_templates
Templates for the hackathon proceedings
layerfmri.github.io
website respositort
neurocontainers
The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines
ohbm2020-posters
Centralized registry of Jitsi rooms for OHBM 2020 posters.
Psychopy
simple stimulation paradigms used. E.g. finger-tapping