Lauren Mak's repositories
bacteria_genome_pull
Download latest bacterial sequencing assembly files from NCBI database (RefSeq or Genbank)
constrained_lda
Online variational Bayes for latent Dirichlet allocation (LDA)
deconvolution_manuscript
Manuscript Source for Minerva
DESMAN
De novo Extraction of Strains from MetAgeNomes
dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
ema
Fast & accurate alignment of barcoded short-reads
lolcode-spec
LOLCODE language specification archives and development.
MAG_Snakemake_wf
Recovery of prokaryotic genomes from shotgun metagenomic sequencing data
metaWRAP
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
minerva_barcode_deconvolution
Sort Linked Read DNA Into Fragment Specific Clusters
miqScoreShotgunPublic
Repo for public-facing shotgun MIQ score
selectionTools
Pipeline to take VCF through to Selection Analysis.
snakemake
This is the development home of the workflow management system Snakemake. For general information, see