latchbio / wf-batch_ge

Latch SDK implementation of BATCH-GE tool (gene editing analysis)

BATCH-GE hosted with the Latch SDK

This is an implementation of the BATCH-GE gene editing analysis tool using the Latch SDK.

BATCH-GE detects and reports indel mutations and other precise genome editing events and calculates the corresponding mutagenesis efficiencies for a large number of samples in parallel.

• Repo
• Paper

Uploading your own BATCH-GE

The contents of this repository were modified from the boilerplate provided by latch init.

You can create your own workflow by

You can replicate the contents of this repo by installing latch and creating some boilerplate like so:

$ pip install latch
$ latch init wf-batch_ge
$ cd wf-batch_ge

You will notice the structure of your boilerplate repository is roughly the same as this repository. Just modify the code in the wf/__init__.py and the Dockerfile, run latch register and you should be able to upload your own version of BATCH-GE.