BioTM, LASIGE, Fac. Ciências, Universidade de Lisboa

MER

Minimal Named-Entity Recognizer (MER)

BiOnt

BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction

DiShIn

Semantic Similarity Measures using Disjunctive Shared Information

BOLSTM

Classifying Relations via Long Short-Term Memory Networks along Biomedical Ontologies

PGR

A Silver Standard Corpus of Human Phenotype-Gene Relations

merpy

MER python interface

REEL

REEL: Relation Extraction for Entity Linking

BENT

Biomedical Term Annotator

K-BiOnt

Biomedical Relation Extraction with Knowledge Graph-based Recommendations

K-RET

K-RET: Knowledgeable Biomedical Relation Extraction System

ICRel

Identifying Cellular Relations

BLiR

Biomarker Literature Retrieval

BOE

BOE: BiOnt Enhanced for Relation Extraction in Gene and Chemical Compounds interactions (DrugProt corpus)

ICERL_system-ICR_Corpus

ICERL system: Iberian Cancer-related Entity Recognition and Linking system ICR corpus: Iberian Cancer-related corpus

MultiNEL-corpus

A multilingual silver standard corpus containing English, Portuguese and Spanish clinical case reports annotated with medical diagnostic codes

RecSys.Scifi.tutorial

knowledge-extraction-from-CORD-19

Knowledge extraction from CORD-19 (COVID-19 Open Research Dataset)

NILINKER

Attention-based approach to NIL Entity Linking

biocreativeVII

lasigeBioTM at BioCreative VII Track 1: Text mining drug and chemical-protein interactions using biomedical ontologies

biocreativeVIII_Track1

ChemRecSys

CheRM

Chemical Compounds Recommender Matrix

SemEval2023_Task-7

cARM

create Astro Ratings Matrix

exposome_NER_NEL

K-RET-NEG

MiCRA

Microbial Communities for Regenerative Agriculture

NPDR

Negative Phenotype-Disease Relations dataset

SeEn

Sequential Enrichment

SemanticSimDBcreator

Semantic Similarity Database Creator