Giters
Uri Laserson (laserson)

laserson

Geek Repo

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Company:Patch Bio

Location:New York, NY

Home Page:patch.bio

Twitter:@laserson

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churchlab
lasersonlab

Uri Laserson's repositories

squarify

Pure Python implementation of the squarify treemap layout algorithm

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pytools

some general useful python tools for genomics

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impyla

Python client and Numba-based UDFs for Impala

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biopython

Official git repository for Biopython (converted from CVS)

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phip-stat

Analysis tools for PhIP-seq experiments

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adam

A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

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airr-formats

Open source formats for AIRR data using Thrift.

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airr-standards

MiAIRR: AIRR Community Minimal Standards WG

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awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

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centrifuge

Classifier for metagenomic sequences

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common-repo-wg

Recommendations from the AIRR Common Repository Working Group

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DeepTCR

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

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dotfiles

.files, including ~/.osx — sensible hacker defaults for OS X

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ENCODE_downloader

Downloader for ENCODE

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gdactions

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gimmemotifs

Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.

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homebrew-science

Scientific formulae for the Homebrew package manager

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leible

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llutil

Laserson Lab Utilities

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loompy

Python implementation of the Loom file format - http://loompy.org

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mhcflurry

Peptide-MHC binding affinity prediction

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myspots

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normed-subway-map

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notion-tools

Python tools to work with Notion

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Pweave

Pweave is a scientific report generator and a literate programming tool for Python. It can capture the results and plots from data analysis and works well with numpy, scipy and matplotlib.

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pygraphistry

PyGraphistry is library to extract, transform, and visually explore big graphs

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Recon

Software and test files for Recon: Reconstruction of Estimated Communities from Observed Numbers

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seqfold

Dependency-less, Pythonic nucleic acid folding

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simdna

A python library for creating simulated regulatory DNA sequences

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tfmodisco

TF MOtif Discovery from Importance SCOres

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