Simplified workflow builder for SeqWare --------------------------------------- THIS SOFTWARE IS SUPER BETA AND A PROOF OF CONCEPT! This is a tool for reducing the overhead of wrapping tools inside SeqWare workflows. It consists of two main components. One is a set of tools to make it easier to get started with SeqWare, the second is a Groovy based system for defining workflows based on the same conventions as SeqWare's workflow system. This language enables you to either run the workflow in a local context with a logfile or to deploy the workflow to a SeqWare environment. QUICK START ----------- wget http://dl.bintray.com/groovy/maven/groovy-binary-2.4.0.zip unzip groovy-binary-2.4.0.zip export PATH=$PWD/groovy-2.4.0/bin/:${PATH} # Only run once ./seqware_setup.sh ./create_examples.sh echo "Run src/example.groovy using local execution environment" ./run_local.sh echo "Run src/example.groovy using the SeqWare environment." ./run_seqware.sh