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lamanno-epfl

lamanno-epfl

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velocycle

Bayesian model for RNA velocity estimation of periodic manifolds

Language:Jupyter NotebookLicense:NOASSERTIONStargazers:16Issues:1Issues:0

tomographer

The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following article: https://www.nature.com/articles/s41587-021-00879-7

Language:Jupyter NotebookLicense:BSD-2-ClauseStargazers:11Issues:3Issues:4

uMAIA

Toolbox for the processing and analysis of MALDI-MSI data

Language:Jupyter NotebookLicense:NOASSERTIONStargazers:6Issues:1Issues:0

rpe_differentiation_profiling_code

Custom code to accompany methods of hESC-RPE differentiation study

Language:HTMLLicense:BSD-2-ClauseStargazers:5Issues:2Issues:0

rgl3_signaling_dopaminergic_analysis

Code for the CellChat signalling analysis of the developing dopaminergic niche accompanying the paper "Transcriptomics and functional analysis define Midbrain Floorplate Radial glia-1 and -3 as dopaminergic progenitors or signaling niche cells, respectively"

Language:Jupyter NotebookLicense:BSD-2-ClauseStargazers:2Issues:1Issues:0

capolupo2021

Notebooks and analysis of the manuscript Capolupo et al. 2021

Language:Jupyter NotebookStargazers:1Issues:3Issues:0