lab-grid / swabseq-analysis

Turning kkovary/swabseq_aws into a containerized Flask API

lab-grid/swabseq-analysis Issues

Add flag to optionally use basespace auth to get sequence data or pull from local directory (user has to specify directory)
Closed 4 years ago1
add fake data to the repo for demo, training, testing purposes
Closed 4 years ago
Switch swabseq-analysis to use `script-runner`
Updated 4 years ago
Generify swabseq-analysis to be able to execute arbitrary scripts.
Closed 4 years ago
Documentation around the usage of swabseq-analysis
Updated 4 years ago
Only return necessary files
Closed 4 years ago
Add classification for control success / control fail
Closed 4 years ago1
run bcl2fastq without compression
Closed 4 years ago1
Use distribution based model to adjust RPP30 threshold in water control wells
Closed 4 years ago1
Batch report for each run
Closed 4 years ago
New arguments for pipeline
Closed 4 years ago
Test if wrapping python script into R script using reticulate
Updated 4 years ago
version suggestion
Closed 4 years ago
Add bcl2fastq installer to repo
Updated 4 years ago