laasousa

OmicronSeverity

Source code to accompany Lancet Paper, Nyberg, Ferguson et al, March 2022

Prediction_performance_survival

Code repository for the manuscript: 'Assessing performance in prediction models with survival outcomes: practical guidance' (manuscript in preparation)

gca

Growth Curve Analysis

react_tutorial_in_R

use htmltools in R to do the Facebook React Tutorial

mgcv-esa-workshop

ML_for_Hackers

Code accompanying the book "Machine Learning for Hackers"

Repeated_Measurements

Shiny App for Repeated Measurements Course

glmm-course

2-day workshop on Generalized Linear Mixed-Effects Modeling in R

FluMOMO

gbd_icd_mapping

IPW

Nowcasting

Nowcasting the number of new symptomatic cases during infectious disease outbreaks using constrained P-spline smoothing

Delay

Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.

BDI_INLA

An Introduction to Spatial Analysis using INLA

infectiousdiseasemodels-2019

Introduction to Mathematical Models of the Epidemiology & Control of Infectious Diseases

useR2019_tutorial

Tutorial for useR2019

EcdcSupportSnippets

Development of various support R code snippets and packages for use for analysis and modelling purposes.

fimdbook

Flexible Imputation of Missing Data - bookdown source

ncov-cfr

R code and documentation to estimate case fatality ratio of 2019-nCoV from cases outside China

yea13

Applies algorithm by Ypma et al. (2013) to detect clusters in surveillance data

EpiForecastsUtils

NobBS

Nowcasting by Bayesian Smoothing

drjacoby

Flexible Markov chain monte carlo via reparameterization

individual

R Package for individual based epidemiological models

COVID19_CFR_submission

Repository for all scripts required to replicate the CFR analysis for paper submission.

scoringutils

EpiNow

Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

covid_adjusted_cfr

BDA_course_Aalto

Bayesian Data Analysis course at Aalto

PHEindicatormethods