Abstract: A curated list of resources for learning bioinformatics.
Purpose:
- Provide some of bioinformatics learning resources for beginners
- Provide a profiling of bioinformatics
Field:
- Next generation sequencing (NGS)
- Bioinformatics Data Analysis
Contents:
- Nature Method
- Nature Genetics
- Bioinformatics
- BMC Bioinformatics
- Nucleic Acids Research
- Genome Research
- UCSC
- NCBI
- ExPASy
- EMBL-EBI
- TCGA
- COSMIC
- St. Jude PeCan Data Portal
- BIG Data Center
- DAVID Bioinformatics Resources
- cBioPortal
- Oncotator
- QIAGEN Analysis Platform
- Wordcloud
- Omictools
- CSCD - Cancer-specific circular RNAs database
- iCoMut
- UniProt
- Pfam
- SMART
- STRING
- DiseaseEnhancer
- SEECancer
- eQTL Browser
- Cistrome Project
- BWA
- STAR
- TMAP
- NovoAlign
- GMAP
- bowtie
- bowtie2
- tophat2
- hisat2
- Edean
- ABySS
- SSAHA2
- oases
- Velvet
- Trinity
- MapSplice2
- RUM
- MECAT
- GATK
- MuTect
- lofreq
- VarScan2
- freebayes
- TVC
- SomaticSniper
- speedseq
- FusionCatcher
- svtoolkit
- pindel
- breakdancer
- delly
- CNVkit
- speedseq
- GRIDSS
- PancanQTL
- TumorFusions
- biopython
- IRanges
- org.Hs.eg.db
- Biobase
- GenomicAlignments
- GenomicRanges
- Rsamtools
- jvarkit
- htslib
- samtools
- bedtools
- vcftools
- bcftools
- bamtools
- bamUtil
- vcflib
- samstat
- seqtk
- sratools
- bcl2fastq2
- ucsc_utils
- MeQA
- IdCheck
- Teamviewer
- Sunlogin
- Splashtop
- Chrome Remote Desktop app
- Logmein
- PC Anywhere
- GoToMyPC
- Radmin
- UltraVNC
- R packages
- stringr
- Bioconductor Tutorial
- limma
- 30分钟学会ggplot2
- R Graphics Cookbook
- Introduction to data.table
- RSQLite
- R Graphics
- Wordcloud2
- SPSS Beginners Tutorials
- 维基百科 - K-Means聚类算法
- 维基百科 - KNN算法
- 维基百科 - SVM算法
- 维基百科 - HMM模型
- 维基百科 - KNN算法
- STAT115课程 - HMM算法PPT
- 机器学习常用算法
- 机器学习资源列表
- 华大基因生物信息学培训教材
- 生物信息学入门
- 《生物信息学入门最佳实践》
- The Biostar Handbook: A Beginner's Guide to Bioinformatics
- Bioinformatics Data Skills
- 生信菜鸟团博客
- 生信技能树论坛