kyungtaekLIM

CellOracle

This is the alpha version of the CellOracle package

sfaira

data and model repository for single-cell data

quickstart-mongodb

AWS Quick Start Team

AMULET

A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.

HiCUP

Hi-C data processing pipeline

nlp

Selected Machine Learning algorithms for natural language processing and semantic analysis in Golang

argparser

:exclamation: This is a read-only mirror of the CRAN R package repository. argparser — Command-Line Argument Parser. Homepage: https://bitbucket.org/djhshih/argparser Report bugs for this package: https://bitbucket.org/djhshih/argparser/issues

methylseq

Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel

Harmony

Harmony framework for connecting scRNA-seq data from discrete time points

gocsv

Command-line CSV processing utility.

csvq

SQL-like query language for csv

textql

Execute SQL against structured text like CSV or TSV

rais-image-server

RAIS: A IIIF-compliant, 100% open source image server for blazing-fast deep zooming

go-iiif

Go package to implement the IIIF Image API.

vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

go-tsne

t-Distributed Stochastic Neighbor Embedding (t-SNE) in Go

tsne

A python wrapper for Barnes-Hut tsne

seurat

R toolkit for single cell genomics

usql

Universal command-line interface for SQL databases

irap

integrated RNA-seq Analysis Pipeline

pyre2

Python wrapper for RE2

MUSIC

MUltiScale enrIchment Calling for ChIP-Seq Datasets

gdctools

Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons

homologysearch

HiCExplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

sQTLseekeR

R package to detect splicing QTLs (sQTLs)

wptools

Wikipedia tools (for Humans): easily extract data from Wikipedia, Wikidata, and other MediaWikis

webapp2-user-accounts

A sample implementation of user account management with webapp2.

rcnn-text-classification

Recurrent Conventinal NN Text Classification for chainer

python-docs-samples

Code samples used on cloud.google.com