kylincom

Learning-AWK-Programming

Learning AWK Programming, published by Packt

TElocal

A package for quantifying transposable elements at a locus level for RNAseq datasets.

NucleoATAC

nucleosome calling using ATAC-seq

sed_awk

sed_awk

dzbook

各种电子书收藏，有需要的请下载~

rosetta

The Rosetta Bio-macromolecule modeling package.

annotate_my_genomes

A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes

spades

SPAdes Genome Assembler

awesome-alternative-splicing

Alternative splicing resource

Awesome-Bioinformatics-CN

生物信息学软件，资源和工具库的精选列表

Awesome-Bioinformatics-CN

生物信息学软件，资源和工具库的精选列表

Genome-annotation-pipeline

Genome annotation pipeline

GenomeAnnotation

Best practices and workflow for genome annotation

LTR_retriever

LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.

RIMA_pipeline

DeepTCR

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

pMTnet

Deep Learning the T Cell Receptor Binding Specificity of Neoantigen

tcr-dist

Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)

sambamba

Tools for working with SAM/BAM data

CLEAN

CLEAN: a contrastive learning model for high-quality functional prediction of proteins

bs3

BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.

Bismark

A tool to map bisulfite converted sequence reads and determine cytosine methylation states

Book4_Power-of-Matrix

Book_4_《矩阵力量》 | 鸢尾花书：从加减乘除到机器学习；上架！

dnmtools

Tools for analyzing DNA methylation data

bioinformatics-cafe

Unsorted scripts for bioinformatics

slamdunk

Streamlining SLAM-seq analysis with ultra-high sensitivity

AGAT

Another Gtf/Gff Analysis Toolkit

SL-quant

A pipeline to quantify SL trans-splicing events from RNA-seq data

deepmito

DeepMito - Prediction of protein sub-mitochondrial localization using deep learning

TargetP-2.0

Detecting Sequence Signals in Targeting Peptides Using Deep Learning