kylessmith

Kyle Smith's repositories

dynamicTreeCut

Python translation of the hybrid dynamicTreeCut method as created by Peter Langfelder and Bin Zhang.

Language:Python37 3 9

ailist

Augmented Interval Tree implemented in Cython/C

Language:CGPL-2.018 4 8

SomVarIUS

Somatic variant identification from unpaired samples

Language:Python15 1 9

cfdna

Cell free DNA package

Language:PythonGPL-2.05 1 1

cbseg

Python implementation of Circular Binary Segmentation

Language:CGPL-2.04 20

SASE-hunter

Signatures of Accelerated Somatic Evolution hunter

Language:Python4 20

hmmCNV

Copy Number Variation detection by HMM

Language:PythonGPL-2.02 10

ngsfragments

Next Generation Fragment manipulation

Language:CGPL-2.02 10

SASE-mapper

Language:Python2 10

bcpseg

Bayesian change point segmentation

Language:C1 10

hg19_info

Repository for hg19 genome annotations

1 10

hg38_info

1 10

intervalframe

Interval Frame

Language:PythonGPL-2.01 10

linear_segment

Segmentation of linear data

Language:CGPL-2.01 10

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

Language:PythonNOASSERTION1 10

python_circos

Language:Python1 20

bio_tools

various bioinformatic tools

Language:Python010

combine_pvalues

Language:Python010

genome_info

Genome information

Language:CGPL-2.0000

hg19genome

hg19 genome annotation

Language:PythonGPL-2.0010

hg38genome

hg38 annotations

Language:PythonGPL-2.0010

ncls

The Nested Containment List for Python. Basically an immutable interval-tree that is silly fast for both construction and lookups.

Language:CBSD-3-Clause000

projectframe

A collection of DataFrame-like objects for the same project

Language:PythonGPL-2.0000

python_NuPoP

Language:FORTRAN01 1