kyleellefsen

cgm

Causal Graphical Models

detect_puffs

A set of algorithms for detecting local calcium signals from image stacks

FCS-measurement-software

A tool for acquiring fluorescence correlation spectroscopy data

light_sheet_analyzer

Creates and displays 4D images acquired from light sheet microscopy

light_sheet_controller

Controller software for custom light sheet microscope

pynsight

A Flika plugin. A clone of Insight2 in Python. This can be used to analyze 2D STORM microscopy movies.

shadowlessTIRF

Shadowless TIRF Galvo Driver

Glams

A browser based animal management system

GlobalAnalysisPlugin

Global Analysis plugin for FLIKA program. Fit user-drawn regions of interest to polynomials for rise-fall time calculation.

kyleellefsen.github.io

rodentTracker

a Flika plugin for behavior analysis of rodents

tnt_analyzer

Analysis for Tunneling nanotubes (TNTs)

BeamSplitter

Beam Splitter plugin for flika

canada_japan_puzzle_solver

This code solves a puzzle made by Eitan Cher for the International Puzzle Party 2016.

cell_counter

A simple script used to count labeled neurons in slices

lean_aoc_2023

Piezo_Channel_Experiments

pytest

The pytest framework makes it easy to write small tests, yet scales to support complex functional testing

UCI_Programming_Club

UCI Programming Club meets weekly and goes over the basics of programming in Python for non-programmers.