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kuijjerlab's repositories

SCORPION

Single Cell Oriented Reconstruction of PANDA-based Individually Optimized Networks

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PySNAIL

Smooth-quantile Normalization Adaptation for Inference of co-expression Links

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retriever

Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data

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lionessR

Single sample network reconstruction in R

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CAVACHON

Cell cluster Analysis with Variational Autoencoder using Conditional Hierarchy Of latent representioN

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PORCUPINE

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multi-omics-course

Repository for the multi-omics course

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phcancer

Persistent homology on Lioness

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PUMA

PUMA: PANDA Using MicroRNA Associations

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PyPuma

Python implementation of PUMA

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BiHiDef

Bipartite adaptation of HiDeF using BRIM

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HiC_networks

Pipeline to convert Hi-C into networks, and perform network analysis on the 3D genome. Code developed by Gabriel Stav

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LIONESS_StarProtocols

Code to support the LIONESS STAR Protocol

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netZooPy

netZooPy is a network biology package implemented in Python.

GPL-3.0000

pypanda

Python implementation of PANDA and LIONESS

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pysambar

SAMBAR (Subtyping Agglomerated Mutations By Annotation Relations) python implementation

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SAMBAR

R package SAMBAR

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