kstreet13

slingshot

Functions for identifying and characterizing continuous developmental trajectories in single-cell data.

bioc2020trajectories

Trajectory inference and differential expression over multiple conditions in scRNA-seq

scry

Collection of analysis methods for small count data generated by rafalab members (the methods, not the data).

VDJdive

For code related to T cell repertoire analysis

mazing

Utilities for making and plotting mazes

assignment

Assignment template for PM 566 that includes automatic rendering of Quarto documents

BiocStickers

Stickers for some Bioconductor packages - feel free to contribute and/or modify.

BraunStreetRCC

breakaway

Species richness with high diversity

dice

An example R package

genuary

mazes

some fun stuff for generating and visualizing mazes

cytofCellID

identification of single, whole cells in CyTOF data

Dune_Paper

Scripts to reproduce analyses of Dune paper.

GOmodules

imc

kidney

Lab3

neutrophils

organoidAD

pbrd

PM566

USC's Introduction to Health Data Science

PR2021replicathon

rafalab.github.io

web page

scrySticker

Code and images for the scry hex sticker

tcr_analysis_scripts

Any scripts related to the TCRseq project that don't belong in the package.

thingsandstuff

Things I've found useful enough to want on multiple computers.

tradeSeq

TRAjectory-based Differential Expression analysis for SEQuencing data

TrajectoryUtils

Trajectory utilities to share between TSCAN, slingshot and other packages.

wnbastandings

Tracking the WNBA standings over the course of the season