Kern-Ralph CoLab

Kern-Ralph CoLab's repositories

diploSHIC

feature-based deep learning for the identification of selective sweeps

Language:PythonMIT49 3 41

discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples

Language:TeXGPL-3.047 3 24

ReLERNN

Recombination Landscape Estimation using Recurrent Neural Networks

Language:PythonMIT47 6 38

locator

deep learning prediction of geographic location from individual genome sequences

Language:PythonNOASSERTION46 5 18

popvae

genotype dimensionality reduction with a VAE

Language:PythonNOASSERTION40 4 5

FILET

Software for detecting introgression using supervised machine learning

Language:CGPL-3.018 2 9

shIC

The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps

Language:C14 1 1

spaceness

Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data

Language:HTML7 30

disperseNN

Estimating dispersal using deep neural networks

Language:Python6 5 2

mapNN

neural network for estimating demographic maps from SNPs

Language:PythonMIT5 30

stairwayPlotMisorient

Liu and Fu's StairwayPlot program modified to estimate a mispolarization parameter

Language:JavaLGPL-3.04 20

colab_wiki

3 50

disperseNN2

estimating dispersal distance from georeferenced polymorphisms

Language:PythonMIT3 2 7

im_clam

package for exact calculation of the joint site frequency spectrum under Isolation with Migration models as described in Kern and Hey (2017) http://www.genetics.org/content/207/1/241

Language:CMIT2 1 4